I have just discovered CutTools (v2.0.9) and am very pleased to have it.
In the interest of making it better, here's a serious problem I encountered and what I hope is a simple fix. For a combination of reasons, splitting a large FLAC resulted in one file not being extracted. I'm pretty sure this is because the total path + filename was too long for Windows.
The problem is that CT didn't show any warning that one file had been skipped. I deleted the big FLAC before I realized that and so can't recover.
==> I suggest that CT warn whenever the OS fails to create a file that CT has requested. If this can't be done, a fallback might be for CT to check afterwards to see if there were as many files created as the cue sheet called for.
Thanks for a great tool.