Supporting information, as requested by greynol:
I validated EAC's error handling using the original Japanese release of Wynton Marsalis' self-titled debut album (1982, CBS/Sony 35DP 33, pressed by CBS/Sony, matrix 35DP-33 11C4). On initial load, EAC v0.95pb3 shows "No" for all tracks in the Pre-Emphasis column and includes no flag information in the cuesheet:
PERFORMER "Wynton Marsalis"
TITLE "Wynton Marsalis"
FILE "Range.wav" WAVE
TRACK 01 AUDIO
TITLE "Father Time"
PERFORMER "Wynton Marsalis"
INDEX 01 00:00:00
TRACK 02 AUDIO
TITLE "I'll Be There When The Time Is Right"
PERFORMER "Wynton Marsalis"
INDEX 01 08:12:50
TRACK 03 AUDIO
TITLE "RJ"
PERFORMER "Wynton Marsalis"
INDEX 01 10:48:00
TRACK 04 AUDIO
TITLE "Hesitation"
PERFORMER "Wynton Marsalis"
INDEX 01 14:39:25
TRACK 05 AUDIO
TITLE "Sister Cheryl"
PERFORMER "Wynton Marsalis"
INDEX 00 20:19:00
INDEX 01 20:24:00
TRACK 06 AUDIO
TITLE "Who Can I Turn To (When Nobody Needs Me)"
PERFORMER "Wynton Marsalis"
INDEX 01 27:47:50
TRACK 07 AUDIO
TITLE "Twilight"
PERFORMER "Wynton Marsalis"
INDEX 01 32:27:00
After running a Detect TOC Manually the Pre-Emphasis column shows "Yes" for all tracks and each track in the cuesheet has a FLAGS PRE line (and bad INDEX 00s for all tracks):
PERFORMER "Wynton Marsalis"
TITLE "Wynton Marsalis"
FILE "Range.wav" WAVE
TRACK 01 AUDIO
TITLE "Father Time"
PERFORMER "Wynton Marsalis"
FLAGS PRE
INDEX 00 00:00:00
INDEX 01 00:00:07
TRACK 02 AUDIO
TITLE "I'll Be There When The Time Is Right"
PERFORMER "Wynton Marsalis"
FLAGS PRE
INDEX 00 00:00:00
INDEX 01 08:12:61
TRACK 03 AUDIO
TITLE "RJ"
PERFORMER "Wynton Marsalis"
FLAGS PRE
INDEX 00 00:00:00
INDEX 01 10:48:09
TRACK 04 AUDIO
TITLE "Hesitation"
PERFORMER "Wynton Marsalis"
FLAGS PRE
INDEX 00 00:00:00
INDEX 01 14:39:40
TRACK 05 AUDIO
TITLE "Sister Cheryl"
PERFORMER "Wynton Marsalis"
FLAGS PRE
INDEX 00 00:00:00
INDEX 01 20:24:11
TRACK 06 AUDIO
TITLE "Who Can I Turn To (When Nobody Needs Me)"
PERFORMER "Wynton Marsalis"
FLAGS PRE
INDEX 00 00:00:00
INDEX 01 27:47:63
TRACK 07 AUDIO
TITLE "Twilight"
PERFORMER "Wynton Marsalis"
FLAGS PRE
INDEX 00 00:00:00
INDEX 01 32:27:13
This is consistent with the disc having the PRE flag in the subcodes but not the TRACK 00 TOC, which CDRDAO confirms:
PQ sub-channel reading (audio track) is supported, data format is BCD.
Raw P-W sub-channel reading (audio track) is supported.
Cooked R-W sub-channel reading (audio track) is supported.
Analyzing track 01 (AUDIO): start 00:00:00, length 08:12:50...
WARNING: Pre-emphasis flag of track differs from TOC - toc file contains TOC setting.
Analyzing track 02 (AUDIO): start 08:12:50, length 02:35:25...
WARNING: Pre-emphasis flag of track differs from TOC - toc file contains TOC setting.
Analyzing track 03 (AUDIO): start 10:48:00, length 03:51:25...
WARNING: Pre-emphasis flag of track differs from TOC - toc file contains TOC setting.
Analyzing track 04 (AUDIO): start 14:39:25, length 05:44:50...
WARNING: Pre-emphasis flag of track differs from TOC - toc file contains TOC setting.
Analyzing track 05 (AUDIO): start 20:24:00, length 07:23:50...
Found pre-gap: 00:05:00
WARNING: Pre-emphasis flag of track differs from TOC - toc file contains TOC setting.
Analyzing track 06 (AUDIO): start 27:47:50, length 04:39:25...
WARNING: Pre-emphasis flag of track differs from TOC - toc file contains TOC setting.
Analyzing track 07 (AUDIO): start 32:27:00, length 08:42:00...
WARNING: Pre-emphasis flag of track differs from TOC - toc file contains TOC setting.
The CDRDAO TOC file indicates no pre-emphasis:
CD_DA
// Track 1
TRACK AUDIO
NO COPY
NO PRE_EMPHASIS
TWO_CHANNEL_AUDIO
FILE "data.wav" 0 08:12:50
// Track 2
TRACK AUDIO
NO COPY
NO PRE_EMPHASIS
TWO_CHANNEL_AUDIO
FILE "data.wav" 08:12:50 02:35:25
// Track 3
TRACK AUDIO
NO COPY
NO PRE_EMPHASIS
TWO_CHANNEL_AUDIO
FILE "data.wav" 10:48:00 03:51:25
// Track 4
TRACK AUDIO
NO COPY
NO PRE_EMPHASIS
TWO_CHANNEL_AUDIO
FILE "data.wav" 14:39:25 05:39:50
// Track 5
TRACK AUDIO
NO COPY
NO PRE_EMPHASIS
TWO_CHANNEL_AUDIO
FILE "data.wav" 20:19:00 07:28:50
START 00:05:00
// Track 6
TRACK AUDIO
NO COPY
NO PRE_EMPHASIS
TWO_CHANNEL_AUDIO
FILE "data.wav" 27:47:50 04:39:25
// Track 7
TRACK AUDIO
NO COPY
NO PRE_EMPHASIS
TWO_CHANNEL_AUDIO
FILE "data.wav" 32:27:00 08:42:00